SmartScope

Introduction

NIEHS/SmartScope

SmartScope

NIEHS/SmartScope

Home
Home
- Home
- Participate
Getting Started
Getting Started
- Requirements
- Installation
  Installation
  - Docker
  - Update
    Update
    
    Update
    
    Specific step for some updates
- Post-install setup
  Post-install setup
- Administration
  Administration
  - Admin Panel
  - Groups
  - Users
  - Microscopes
  - Detectors
Advanced Setup
Advanced Setup
- Environment variables
- GPU passthrough
- Enabling HTTPS
- Custom Data Paths
- External Plugins
- Edit default values
- Development
  Development
  - Setting up a SmartScope Development Environment
  - Fake scope mode
Use SmartScope
Use SmartScope
- Introduction
- User Interface
  User Interface
  - Preparation
    Preparation
    
    Prepare SerialEM
    
    Session Setup
    
    Preprocessing Pipeline
    
    Run a Session
  - Browsing Results
    Browsing Results
    
    Session Browser
  - Report Panel
    Report Panel
    
    Introduction
    
    Status Bar
    
    Low-Magnification Maps
    
    High-Magnification Maps
  - Data Collection
    Data Collection
    
    Multishot per hole
- Detailed procedures
  Detailed procedures
  - Data collection
- Acquisition procotols
  Acquisition procotols
CLI
CLI
API
API
- REST API
  REST API
  - Programatic
  - Web Browser
- Plugin API
  Plugin API
- Protocol API
  Protocol API
Cite SmartScope
Contact us

Introduction

This section aims at describing the user interface and everything that can be done with SmartScope through the Web interface. This is the section that most users need to pay attention to.