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SmartScope Documentation
SmartScope Home
Latest News
Beta Program
Installation
Minimal requirements
Installation with Docker or Podman
How to prepare your docker-compose file
Complete list of environment variables
Installation with Anaconda/Miniconda
Additionnal information on installation
Complete list of environment variables
Updating SmartScope
Updating a podman installation
Setup
Admin portal
SerialEM setup
Web Interface
Log in
Navigation
Running SmartScope
How to prepare SerialEM
Set up SmartScope
Session page
Testing and Troubleshooting
Testing SmartScope without the microscope
How to Cite
Contact Us
License
Versions
0.8
v0.7
Branches
dev
stable
repository
open issue
.rst
.pdf
Setup
Setup
Admin portal
Accessing the admin portal
Users
Groups
Microscope
Detector
SerialEM setup
Calibrations
1- Setting up external python for SerialEM
Testing the connection to serialEM
2- Register a microscope to the SmartScope database
General
Hardware constants
Smartscope Worker
SerialEM external python connection
Filesystem Paths
3- Register a microscope to the SmartScope database
4- Low-dose Presets
Search
View
Preview
Record
Focus/Trial
5- Non Low-dose Presets
6- Hole Reference Image