.. SmartScope documentation master file, created by
   sphinx-quickstart on Tue Jan 11 13:10:51 2022.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

SmartScope Home
===============
.. note:: This documentation website is still under construction.

SmartScope is a framework for automated cryo-electron microscopy (Cryo-EM). 
The main purpose is to automate specimen screening, document the process, and provide a portal for visualization and interaction with the microscope.
The software bundles a database, the main imaging workflow and a web user-inteface for easy access. 
To run Smartscope, simply fill the form about which grids to be screened, press start and wait for live results to come in.

.. figure:: /_static/webui.png
   :width: 90%
   :align: center
   :figclass: align-center

   SmartScope webUI example



Site map
========

.. toctree::

   news.rst
   beta.rst
   installation.rst
   update.rst
   setup.rst
   overview.rst
   run_smartscope.rst
   testing.rst
   citation.rst
   contact.rst
   license.rst


   
Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`